species:   Rhsol
pid:       PID0480
parent:    Rhi-milR-71
paralog:   
locus:     KB317805.1:5948-6017
matures:   ['GAUGGAUCCGUAGGUGUUGGCG', 'CCAAGGUGCUGUGGAUCCAUAGC']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317805.1:5948-6017

10 out of bounds
3 alignments
3 proper strand
3 stranded perfect matches

        *************************   **************************        
GCAGGGGGGGGAUGGAUCCGUAGGUGUUGGCGCUAAGUGCCAAGGUGCUGUGGAUCCAUAGCCCCCUGUC
((((((((...((((((((((((.(.(((((((...))))))).)..))))))))))))..)))))))).
----------GAUGGAUCCGUAGGUGUUGGCG-------------------------------------- l=22 a=0 c
---------------------------------------CCAAGGUGCUGUGGAUCCAUAGC-------- l=23 a=0 c*
----------GAUGGAUCCGUAGGUGUUGGCGC------------------------------------- l=23 a=1 ma
--------------------------------------GCCAAGGUGCUGUGGAUCCAUAGC-------- l=24 a=0 ma*

----------GAUGGAUCCGUAGGUGUUGGCGC------------------------------------- l=23 a=1 (ma)
-----------AUGGAUCCGUAGGUGUUGGCGC------------------------------------- l=22 a=1 
-----------AUGGAUCCGUAGGUGUUGGCGCU------------------------------------ l=23 a=1 

mb-01011
ax-1011111
ku-01
ss-110111111110
fn-011
